|
| June 2nd |
| 9:30-10:30 |
|
Inauguration (Director, ISI;
Director, IMM; Dan Weeks, Partha Majumder) |
|
| 10:30-11:00 |
|
Coffee/Tea Break |
|
| 11:00-11:30 |
PM |
Inaugural Lecture ("What is a
Complex Trait?") |
Video;
Slides
|
| 12:00-13:30 |
|
Student Presentations and Teacher-Student
Interaction |
|
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
EF |
Refresher Statistics - 1 |
Slides |
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-18:00 |
NPB/PM |
Refresher Genetics - 1 |
Slides
|
| 18:00-18:30 |
|
Discussion |
|
|
| June 3rd |
| 9:30-11:00 |
EF |
Refresher Statistics - 2 |
Slides |
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
SG/SRC |
Refresher Genetics - 2 |
Slides (SG) |
| 12:30-13:30 |
|
Special Lecture [Kunal Ray (Indian
Institute of Chemical Biology, Kolkata): Exploiting Genome
Databases for Understanding Complex Human Diseases] |
Video |
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
LP |
Bioethics - 1 (General principles,
Similarities and Differences in Ethical Guidelines) |
Slides |
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-18:30 |
MB/DW |
Introduction to Linux/Unix & Computer
Exercises on Unix |
Slides
|
|
| June 4th |
| 9:30-11:00 |
LP |
Bioethics - 2: Cross-cultural differences:
Informed Consent, Privacy Confidentiality) |
Slides |
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
PM |
Case-control study design, Association
measures, Relative risk & Odds-ratio, Sample size determination |
Slides
|
| 12:30-13:30 |
|
Special Lecture [Susanta
Roychoudhury (Indian Institute of Chemical Biology, Kolkata): Genetic
Susceptibility to Common Cancers: A Model for Genetics of a Complex
Trait] |
|
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
MB/DW |
File format basics: Theory & Computer
Exercises |
Slides
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-17:00 |
PM |
Indian National Bioethics Policy &
Guidlines |
Slides
|
| 17:00-18:30 |
MB |
Study Designs: Simple and Complex Traits |
Slides |
|
| June 5th |
| 9:30-11:00 |
PM |
Linkage: Basic concepts and Models |
Slides
|
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
DW |
Genotype and Relationship error detection |
Slides
|
| 12:30-13:30 |
|
Special Lecture [Bidyut Roy (Indian
Statistical Institute, Kolkata): Animal Models for Human Cancer] |
|
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
MB/DW |
Computer exercise on genotype and
relationship error detection |
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-17:00 |
|
Discussion |
|
| 17:00-18:30 |
LP |
Bioethics - 3: Ethical issues in data and
tissue archiving |
Slides |
|
| June 6th |
| 9:30-11:00 |
EF |
Identity-by-descent: Concepts and
Applications |
Slides |
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
EF |
Nonparametric linkage analysis |
Slides |
| 12:30-13:30 |
|
Special Lecture [Nitai P.
Bhattacharyya (Saha Institute of Nuclear Physics, Kolkata) Huntington's
Disease: Complex nature of a simple disease - from linkage to possible
vaccine] |
|
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
MB/DW |
Computer Exercise on nonparametric linkage
analysis |
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-18:30 |
|
Discussion |
|
|
| June 7th |
| 9:30-11:00 |
DW |
Parametric linkage analysis - 1 |
|
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
MB/DW |
Computer Exercises on parametric linkage
analysis |
|
| 12:30-13:30 |
|
Special Lecture [Eleanor Feingold
(University of Pittsburgh) Design and Analysis of Gene Expression
Microarray Studies] |
Video
Slides |
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
DW |
Parametric linkage analysis - 2 |
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-18:30 |
MB/DW |
Computer Exercises on parametric linkage
analysis |
|
|
| June
8th (rest and relaxation) |
|
| June 9th |
| 9:30-11:00 |
MB/DW |
Lecture and computer exercises on power
estimation and linkage analysis |
Slides
|
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
PM |
Haplotypes, haplotype tracking in
families, CVCD model and haplotype evolution |
Slides
|
| 12:30-13:30 |
|
Special Lecture [G. Padmanaban
(Indian Institute of Science, Bangalore): The Genomes are in Place.
Can we ask the right questions to handle malaria?] |
Video |
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
MB/DW |
Computer exercises on haplotyping |
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-18:30 |
MB/DW |
Lecture and computer exercises on
case-control/genomic-control/population stratification |
|
|
| June 10th |
| 9:30-11:00 |
SG |
Transmission-Disequilibrium Test (TDT) |
Slides |
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
SG |
Sib-TDT |
Slides |
| 12:30-13:30 |
|
Panel Discussion [Chair: Barun
Mukhopadhyay (Indian Statistical Institute, Kolkata) Complex
Traits: Study Design, Environmental Correlates, Importance of
Estimating Genotype-Environmental Interaction] |
|
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
MB/DW |
Computer exercises on TDT |
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-18:00 |
MB |
Quantitative traits: Statistical
preliminaries |
Slides |
| 18:00-18:30 |
|
Discussion |
|
|
| June 11th |
| 9:30-11:00 |
SG |
QTL mapping |
Slides |
| 11:00-11:30 |
|
Coffee/Tea Break |
|
| 11:30-12:30 |
MB/DW |
Computer Exercises on QTL mapping |
|
| 12:30-13:30 |
|
Special Lecture [Ashis Mukherjee
(CpG, Kolkata): Drug Discovery Today Ð A Multidisciplinary
Treasure Hunt] |
Video |
| 13:30-14:30 |
|
Lunch Break |
|
| 14:30-16:00 |
MB/DW |
Computer exercises on QTL mapping |
|
| 16:00-16:30 |
|
Coffee/Tea Break |
|
| 16:30-17:30 |
|
Valedictory Lecture [S.K.
Brahmachari (Institute of Genomics & Integrative Biology, Delhi): Complex
Human Traits: The Road Ahead] |
|
| 17:30-18:30 |
|
Comments from participants |
|
